Develop Reference

D3 nodes optimalization to prevent lagging UI

For a hobby project I started working with ReactJS in combination with D3. The intention was to shape the current crypto market in the form of bubbles. Now this has been achieved, but I am not satisfied with the performance here. Is there a way to make 3 nodes run smoother so that the UI becomes more practiced? Should I look at html canvas?
The code I wrote:
import "../styles/style.css";
import $ from "jquery";
import * as d3 from "d3";
import axios from "axios";
export default class Bubbles extends Component {
constructor() {
super();
this.state = {
isLoading: true, cryptoData: []
};
}
componentDidMount() {
console.debug("After mount! Let's load data from API...");
axios.get('https://api.coingecko.com/api/v3/coins/markets?vs_currency=usd&per_page=50')
.then(response => {
this.setState({ cryptoData: response.data });
this.setState({ isLoading: false });
});
}
render() {
const { isLoading, cryptoData } = this.state;
const coins = [];
var data = [];
for (let i = 0; i < cryptoData.length; i++) {
var coin = cryptoData[i];
var minplus = String(coin.market_cap_change_percentage_24h);
if (minplus.includes("-")) {
coin["color"] = "red";
} else {
coin["color"] = "green";
}
coins.push(coin);
}
coins.forEach((coin) => {
var text = coin.symbol;
var r = coin.market_cap / 2000000000;
if (r < 5) {
r = 10;
}
data.push({
text: text,
category: coin.price_change_percentage_24h + "%",
image: coin.image,
color: coin.color,
r: r,
});
});
function collide(alpha) {
var quadtree = d3.geom.quadtree(data);
return function (d) {
var r = d.r + 10,
nx1 = d.x - r,
nx2 = d.x + r,
ny1 = d.y - r,
ny2 = d.y + r;
quadtree.visit(function (quad, x1, y1, x2, y2) {
if (quad.point && quad.point !== d) {
var x = d.x - quad.point.x,
y = d.y - quad.point.y,
l = Math.sqrt(x * x + y * y),
r = d.r + quad.point.r;
if (l < r) {
l = ((l - r) / l) * (1 + alpha);
d.x -= x *= l;
d.y -= y *= l;
quad.point.x += x;
quad.point.y += y;
}
}
return x1 > nx2 || x2 < nx1 || y1 > ny2 || y2 < ny1;
});
};
}
const bubbleCloud = (element) => {
var container = d3.select(".bubble-cloud");
var $container = $(".bubble-cloud");
var containerWidth = $container.width();
var containerHeight = $container.height();
var svgContainer = container
.append("svg")
.attr("width", containerWidth)
.attr("height", containerHeight);
// prepare layout
var force = d3.layout
.force()
.size([containerWidth, containerHeight])
.gravity(0)
.charge(0)
.friction(1);
// load data
force.nodes(data).start();
// create item groups
var node = svgContainer
.selectAll(".node")
.data(data)
.enter()
.append("g")
.attr("class", "node")
.call(force.drag);
var zoom = d3.behavior
.zoom()
.scaleExtent([1, 50])
.on("zoom", function () {
var e = d3.event,
tx = Math.min(
0,
Math.max(e.translate[0], containerWidth - containerWidth * e.scale)
),
ty = Math.min(
0,
Math.max(e.translate[1], containerHeight - containerHeight * e.scale)
);
zoom.translate([tx, ty]);
node.attr(
"transform",
["translate(" + [tx, ty] + ")", "scale(" + e.scale + ")"].join(" ")
);
});
node.call(zoom);
// create circles
var defs = node.append("defs");
function makeFiter(id, color) {
//make a filter if filter id not present
if (defs.selectAll("#" + id).empty()) {
var filter = defs
.append("filter")
.attr("id", id)
.attr("height", "300%")
.attr("width", "300%")
.attr("x", "-100%")
.attr("y", "-100%");
filter
.append("feGaussianBlur")
.attr("in", "SourceAlpha")
.attr("stdDeviation", 10)
.attr("result", "blur");
filter
.append("feOffset", 0)
.attr("in", "blur")
.attr("result", "offsetBlur");
filter
.append("feFlood")
.attr("in", "offsetBlur")
.attr("flood-color", color)
.attr("flood-opacity", "1")
.attr("result", "offsetColor");
filter
.append("feComposite")
.attr("in", "offsetColor")
.attr("in2", "offsetBlur")
.attr("operator", "in")
.attr("result", "offsetBlur");
var feMerge = filter.append("feMerge");
feMerge.append("feMergeNode").attr("in", "offsetBlur");
feMerge.append("feMergeNode").attr("in", "SourceGraphic");
}
return "url(#" + id + ")"; //return the filter id
}
function getFilter(d) {
if (d.color === "red") {
return makeFiter("fill-text-red", "red");
} else if (d.color === "green") {
return makeFiter("fill-text-green", "green");
}
}
defs
.selectAll(null)
.data(data)
.enter()
.append("pattern")
.attr("id", function (d) {
return d.image;
})
.attr("height", "100%")
.attr("width", "100%")
.attr("patternContentUnits", "objectBoundingBox")
.append("image")
.attr("height", 1)
.attr("width", 1)
.attr("preserveAspectRatio", "none")
.attr("xlink:href", function (d) {
return d.image;
});
node
.append("circle")
.attr("r", 1e-6)
.style("fill", function (d) {
return "url(#" + d.image + ")";
})
.attr("filter", function (d) {
return getFilter(d);
})
.on("mouseover", function (d) {
d3.select(this)
.attr("r", 10)
.style("stroke", "white")
.style("cursor", "pointer");
})
.on("mouseout", function (d) {
d3.select(this).attr("r", 5.5).style("stroke", "none");
});
// create labels
node
.append("text")
.text(function (d) {
return d.text;
})
.classed("text", true)
.style({
fill: "#141823 ",
"text-anchor": "middle",
"font-size": "1vw",
"font-weight": "bold",
"text-transform": "uppercase",
"font-family": "Open Sans, sans-serif",
});
//.attr("stroke", "black")
//.attr("stroke-width", "1px");
node
.append("text")
.text(function (d) {
return d.category;
})
.classed("category", true)
.style("fill", function (d) {
return d.category.match("-") ? "red" : "green";
})
.style({
"text-anchor": "middle",
"font-size": "12px",
"font-weight": "bold",
"text-transform": "uppercase",
"font-family": "Open Sans, sans-serif",
});
//.attr("stroke", "black")
//.attr("stroke-width", "1px");
node
//.append("line")
//.classed("line", true)
//.attr({
// x1: 0,
// y1: 0,
// x2: 0,
// y2: 0,
//})
.attr("stroke-width", 1)
.attr("stroke", function (d) {
return d.stroke;
});
// put circle into movement
force.on("tick", function (e) {
d3.selectAll("circle")
.each(collide(0.1))
.attr("r", function (d) {
return d.r;
})
.attr("cx", function (d) {
// boundaries
if (d.x <= d.r) {
d.x = d.r + 1;
}
if (d.x >= containerWidth - d.r) {
d.x = containerWidth - d.r - 1;
}
return d.x;
})
.attr("cy", function (d) {
// boundaries
if (d.y <= d.r) {
d.y = d.r + 1;
}
if (d.y >= containerHeight - d.r) {
d.y = containerHeight - d.r - 1;
}
return d.y;
});
d3.selectAll("line").attr({
x1: function (d) {
return d.x - d.r + 10;
},
y1: function (d) {
return d.y;
},
x2: function (d) {
return d.x + d.r - 10;
},
y2: function (d) {
return d.y;
},
});
d3.selectAll(".text")
.attr("x", function (d) {
return d.x;
})
.attr("y", function (d) {
return d.y - 10;
});
d3.selectAll(".category")
.attr("x", function (d) {
return d.x;
})
.attr("y", function (d) {
return d.y + 20;
});
force.alpha(0.1);
});
};
if(isLoading){
return <div className="App">Loading...</div>;
}
return (
<div>
<div className="bubble-cloud" ref={bubbleCloud}></div>
<table className="styled-table">
<thead>
<tr>
<th>#</th>
<th>COIN</th>
<th>NAAM</th>
<th>PRIJS</th>
<th>ALL TIME HIGH</th>
<th>24u</th>
<th>VOLUME</th>
<th>MARKT KAPITALISATIE</th>
<th>TRADE</th>
</tr>
</thead>
<tbody>
{coins.map((coin) => {
var refLink =
"https://www.binance.com/en/trade/" +
coin.symbol +
"_USDT?layout=pro&ref=AISWVEO9&type=spot";
return (
<tr key={coin.id}>
<td>{coin.market_cap_rank}</td>
<td>
<img src={coin.image} alt="icon" height="50px"/>
</td>
<td>{coin.name}</td>
<td>${coin.current_price}</td>
<td>${coin.ath}</td>
<td>
{coin.price_change_percentage_24h}
%
</td>
<td>{coin.total_volume}</td>
<td>US ${coin.market_cap}</td>
<td>
<a href={refLink}>
<img
border="0"
alt="Binance"
src="https://user-images.githubusercontent.com/12424618/54043975-b6cdb800-4182-11e9-83bd-0cd2eb757c6e.png"
width="20"
height="20"
className="refImg"
/>
</a>
</td>
</tr>
);
})}
</tbody>
</table>
</div>
);
}
}
Im hosting my project on this website
Maybe you guys can point me in the right direction?

D3.js hierarchical edge bundling coloring by group

I am trying to color the connections in my hierarchical edge bundling visualization based on the groups they are connecting to. An example of this can be seen here.
Here is my current mouseover function:
function mouseover(d) {
svg.selectAll("path.link.target-" + d.key)
.classed("target", true)
.each(updateNodes("source", true));
svg.selectAll("path.link.source-" + d.key)
.classed("source", true)
.each(updateNodes("target", true));
}
And here is the mouseover function from the example I've posted:
function mouseovered(d)
{
// Handle tooltip
// Tooltips should avoid crossing into the center circle
d3.selectAll("#tooltip").remove();
d3.selectAll("#vis")
.append("xhtml:div")
.attr("id", "tooltip")
.style("opacity", 0)
.html(d.title);
var mouseloc = d3.mouse(d3.select("#vis")[0][0]),
my = ((rotateit(d.x) > 90) && (rotateit(d.x) < 270)) ? mouseloc[1] + 10 : mouseloc[1] - 35,
mx = (rotateit(d.x) < 180) ? (mouseloc[0] + 10) : Math.max(130, (mouseloc[0] - 10 - document.getElementById("tooltip").offsetWidth));
d3.selectAll("#tooltip").style({"top" : my + "px", "left": mx + "px"});
d3.selectAll("#tooltip")
.transition()
.duration(500)
.style("opacity", 1);
node.each(function(n) { n.target = n.source = false; });
currnode = d3.select(this)[0][0].__data__;
link.classed("link--target", function(l) {
if (l.target === d)
{
return l.source.source = true;
}
if (l.source === d)
{
return l.target.target = true;
}
})
.filter(function(l) { return l.target === d || l.source === d; })
.attr("stroke", function(d){
if (d[0].name == currnode.name)
{
return color(d[2].cat);
}
return color(d[0].cat);
})
.each(function() { this.parentNode.appendChild(this); });
d3.selectAll(".link--clicked").each(function() { this.parentNode.appendChild(this); });
node.classed("node--target", function(n) {
return (n.target || n.source);
});
}
I am somewhat new to D3, but I am assuming what I'll need to do is check the group based on the key and then match it to the same color as that group.
My full code is here:
<script type="text/javascript">
color = d3.scale.category10();
var w = 840,
h = 800,
rx = w / 2,
ry = h / 2,
m0,
rotate = 0
pi = Math.PI;
var splines = [];
var cluster = d3.layout.cluster()
.size([360, ry - 180])
.sort(function(a, b) {
return d3.ascending(a.key, b.key);
});
var bundle = d3.layout.bundle();
var line = d3.svg.line.radial()
.interpolate("bundle")
.tension(.5)
.radius(function(d) {
return d.y;
})
.angle(function(d) {
return d.x / 180 * Math.PI;
});
// Chrome 15 bug: <http://code.google.com/p/chromium/issues/detail?id=98951>
var div = d3.select("#bundle")
.style("width", w + "px")
.style("height", w + "px")
.style("position", "absolute");
var svg = div.append("svg:svg")
.attr("width", w)
.attr("height", w)
.append("svg:g")
.attr("transform", "translate(" + rx + "," + ry + ")");
svg.append("svg:path")
.attr("class", "arc")
.attr("d", d3.svg.arc().outerRadius(ry - 180).innerRadius(0).startAngle(0).endAngle(2 * Math.PI))
.on("mousedown", mousedown);
d3.json("TASKS AND PHASES.json", function(classes) {
var nodes = cluster.nodes(packages.root(classes)),
links = packages.imports(nodes),
splines = bundle(links);
var path = svg.selectAll("path.link")
.data(links)
.enter().append("svg:path")
.attr("class", function(d) {
return "link source-" + d.source.key + " target-" + d.target.key;
})
.attr("d", function(d, i) {
return line(splines[i]);
});
var groupData = svg.selectAll("g.group")
.data(nodes.filter(function(d) {
return (d.key == 'Department' || d.key == 'Software' || d.key == 'Tasks' || d.key == 'Phases') && d.children;
}))
.enter().append("group")
.attr("class", "group");
var groupArc = d3.svg.arc()
.innerRadius(ry - 177)
.outerRadius(ry - 157)
.startAngle(function(d) {
return (findStartAngle(d.__data__.children) - 2) * pi / 180;
})
.endAngle(function(d) {
return (findEndAngle(d.__data__.children) + 2) * pi / 180
});
svg.selectAll("g.arc")
.data(groupData[0])
.enter().append("svg:path")
.attr("d", groupArc)
.attr("class", "groupArc")
.attr("id", function(d, i) {console.log(d.__data__.key); return d.__data__.key;})
.style("fill", function(d, i) {return color(i);})
.style("fill-opacity", 0.5)
.each(function(d,i) {
var firstArcSection = /(^.+?)L/;
var newArc = firstArcSection.exec( d3.select(this).attr("d") )[1];
newArc = newArc.replace(/,/g , " ");
svg.append("path")
.attr("class", "hiddenArcs")
.attr("id", "hidden"+d.__data__.key)
.attr("d", newArc)
.style("fill", "none");
});
svg.selectAll(".arcText")
.data(groupData[0])
.enter().append("text")
.attr("class", "arcText")
.attr("dy", 15)
.append("textPath")
.attr("startOffset","50%")
.style("text-anchor","middle")
.attr("xlink:href",function(d,i){return "#hidden" + d.__data__.key;})
.text(function(d){return d.__data__.key;});
svg.selectAll("g.node")
.data(nodes.filter(function(n) {
return !n.children;
}))
.enter().append("svg:g")
.attr("class", "node")
.attr("id", function(d) {
return "node-" + d.key;
})
.attr("transform", function(d) {
return "rotate(" + (d.x - 90) + ")translate(" + d.y + ")";
})
.append("svg:text")
.attr("dx", function(d) {
return d.x < 180 ? 25 : -25;
})
.attr("dy", ".31em")
.attr("text-anchor", function(d) {
return d.x < 180 ? "start" : "end";
})
.attr("transform", function(d) {
return d.x < 180 ? null : "rotate(180)";
})
.text(function(d) {
return d.key.replace(/_/g, ' ');
})
.on("mouseover", mouseover)
.on("mouseout", mouseout);
d3.select("input[type=range]").on("change", function() {
line.tension(this.value / 100);
path.attr("d", function(d, i) {
return line(splines[i]);
});
});
});
d3.select(window)
.on("mousemove", mousemove)
.on("mouseup", mouseup);
function mouse(e) {
return [e.pageX - rx, e.pageY - ry];
}
function mousedown() {
m0 = mouse(d3.event);
d3.event.preventDefault();
}
function mousemove() {
if (m0) {
var m1 = mouse(d3.event),
dm = Math.atan2(cross(m0, m1), dot(m0, m1)) * 180 / Math.PI;
div.style("-webkit-transform", "translate3d(0," + (ry - rx) + "px,0)rotate3d(0,0,0," + dm + "deg)translate3d(0," + (rx - ry) + "px,0)");
}
}
function mouseup() {
if (m0) {
var m1 = mouse(d3.event),
dm = Math.atan2(cross(m0, m1), dot(m0, m1)) * 180 / Math.PI;
rotate += dm;
if (rotate > 360) rotate -= 360;
else if (rotate < 0) rotate += 360;
m0 = null;
div.style("-webkit-transform", "rotate3d(0,0,0,0deg)");
svg.attr("transform", "translate(" + rx + "," + ry + ")rotate(" + rotate + ")")
.selectAll("g.node text")
.attr("dx", function(d) {
return (d.x + rotate) % 360 < 180 ? 25 : -25;
})
.attr("text-anchor", function(d) {
return (d.x + rotate) % 360 < 180 ? "start" : "end";
})
.attr("transform", function(d) {
return (d.x + rotate) % 360 < 180 ? null : "rotate(180)";
});
}
}
function mouseover(d) {
svg.selectAll("path.link.target-" + d.key)
.classed("target", true)
.each(updateNodes("source", true));
svg.selectAll("path.link.source-" + d.key)
.classed("source", true)
.each(updateNodes("target", true));
}
function mouseout(d) {
svg.selectAll("path.link.source-" + d.key)
.classed("source", false)
.each(updateNodes("target", false));
svg.selectAll("path.link.target-" + d.key)
.classed("target", false)
.each(updateNodes("source", false));
}
function updateNodes(name, value) {
return function(d) {
if (value) this.parentNode.appendChild(this);
svg.select("#node-" + d[name].key).classed(name, value);
};
}
function cross(a, b) {
return a[0] * b[1] - a[1] * b[0];
}
function dot(a, b) {
return a[0] * b[0] + a[1] * b[1];
}
function findStartAngle(children) {
var min = children[0].x;
children.forEach(function(d) {
if (d.x < min)
min = d.x;
});
return min;
}
function findEndAngle(children) {
var max = children[0].x;
children.forEach(function(d) {
if (d.x > max)
max = d.x;
});
return max;
}
</script>

Here's an example solution in D3 v6 adapting the Observable example plus my answer to this other question. Basic points:
You will to add the 'group' into the input data - for the data you mention in the comments I've defined group as the 2nd element (per dot separation) of the name. The hierarchy function in the Observable appears to strip this.
It's probably fortunate that all the name values are e.g. root.parent.child - this makes the leafGroups work quite well for your data (but might not for asymmetric hierarchies).
Define a colour range e.g. const colors = d3.scaleOrdinal().domain(leafGroups.map(d => d[0])).range(d3.schemeTableau10); which you can use for arcs, label text (nodes), paths (links)
I've avoided using the mix-blend-mode styling with the example as it doesn't look good to me.
I'm applying the styles in overed and outed - see below for the logic.
See the comments in overed for styling logic on mouseover:
function overed(event, d) {
//link.style("mix-blend-mode", null);
d3.select(this)
// set dark/ bold on hovered node
.style("fill", colordark)
.attr("font-weight", "bold");
d3.selectAll(d.incoming.map(d => d.path))
// each link has data with source and target so you can get group
// and therefore group color; 0 for incoming and 1 for outgoing
.attr("stroke", d => colors(d[0].data.group))
// increase stroke width for emphasis
.attr("stroke-width", 4)
.raise();
d3.selectAll(d.outgoing.map(d => d.path))
// each link has data with source and target so you can get group
// and therefore group color; 0 for incoming and 1 for outgoing
.attr("stroke", d => colors(d[1].data.group))
// increase stroke width for emphasis
.attr("stroke-width", 4)
.raise()
d3.selectAll(d.incoming.map(([d]) => d.text))
// source and target nodes to go dark and bold
.style("fill", colordark)
.attr("font-weight", "bold");
d3.selectAll(d.outgoing.map(([, d]) => d.text))
// source and target nodes to go dark and bold
.style("fill", colordark)
.attr("font-weight", "bold");
}
See the comments in outed for styling logic on mouseout:
function outed(event, d) {
//link.style("mix-blend-mode", "multiply");
d3.select(this)
// hovered node to revert to group colour on mouseout
.style("fill", d => colors(d.data.group))
.attr("font-weight", null);
d3.selectAll(d.incoming.map(d => d.path))
// incoming links to revert to 'colornone' and width 1 on mouseout
.attr("stroke", colornone)
.attr("stroke-width", 1);
d3.selectAll(d.outgoing.map(d => d.path))
// incoming links to revert to 'colornone' and width 1 on mouseout
.attr("stroke", colornone)
.attr("stroke-width", 1);
d3.selectAll(d.incoming.map(([d]) => d.text))
// incoming nodes to revert to group colour on mouseout
.style("fill", d => colors(d.data.group))
.attr("font-weight", null);
d3.selectAll(d.outgoing.map(([, d]) => d.text))
// incoming nodes to revert to group colour on mouseout
.style("fill", d => colors(d.data.group))
.attr("font-weight", null);
}
Working example with the data you mentioned in the comments:
const url = "https://gist.githubusercontent.com/robinmackenzie/5c5d2af4e3db47d9150a2c4ba55b7bcd/raw/9f9c6b92d24bd9f9077b7fc6c4bfc5aebd2787d5/harvard_vis.json";
const colornone = "#ccc";
const colordark = "#222";
const width = 600;
const radius = width / 2;
d3.json(url).then(json => {
// hack in the group name to each object
json.forEach(o => o.group = o.name.split(".")[1]);
// then render
render(json);
});
function render(data) {
const line = d3.lineRadial()
.curve(d3.curveBundle.beta(0.85))
.radius(d => d.y)
.angle(d => d.x);
const tree = d3.cluster()
.size([2 * Math.PI, radius - 100]);
const root = tree(bilink(d3.hierarchy(hierarchy(data))
.sort((a, b) => d3.ascending(a.height, b.height) || d3.ascending(a.data.name, b.data.name))));
const svg = d3.select("body")
.append("svg")
.attr("width", width)
.attr("height", width)
.append("g")
.attr("transform", `translate(${radius},${radius})`);
const arcInnerRadius = radius - 100;
const arcWidth = 20;
const arcOuterRadius = arcInnerRadius + arcWidth;
const arc = d3
.arc()
.innerRadius(arcInnerRadius)
.outerRadius(arcOuterRadius)
.startAngle((d) => d.start)
.endAngle((d) => d.end);
const leafGroups = d3.groups(root.leaves(), d => d.parent.data.name);
const arcAngles = leafGroups.map(g => ({
name: g[0],
start: d3.min(g[1], d => d.x),
end: d3.max(g[1], d => d.x)
}));
const colors = d3.scaleOrdinal().domain(leafGroups.map(d => d[0])).range(d3.schemeTableau10);
svg
.selectAll(".arc")
.data(arcAngles)
.enter()
.append("path")
.attr("id", (d, i) => `arc_${i}`)
.attr("d", (d) => arc({start: d.start, end: d.end}))
.attr("fill", d => colors(d.name))
svg
.selectAll(".arcLabel")
.data(arcAngles)
.enter()
.append("text")
.attr("x", 5)
.attr("dy", (d) => ((arcOuterRadius - arcInnerRadius) * 0.8))
.append("textPath")
.attr("class", "arcLabel")
.attr("xlink:href", (d, i) => `#arc_${i}`)
.text((d, i) => ((d.end - d.start) < (6 * Math.PI / 180)) ? "" : d.name);
// add nodes
const node = svg.append("g")
.attr("font-family", "sans-serif")
.attr("font-size", 10)
.selectAll("g")
.data(root.leaves())
.join("g")
.attr("transform", d => `rotate(${d.x * 180 / Math.PI - 90}) translate(${d.y}, 0)`)
.append("text")
.attr("dy", "0.31em")
.attr("x", d => d.x < Math.PI ? (arcWidth + 5) : (arcWidth + 5) * -1)
.attr("text-anchor", d => d.x < Math.PI ? "start" : "end")
.attr("transform", d => d.x >= Math.PI ? "rotate(180)" : null)
.text(d => d.data.name)
.style("fill", d => colors(d.data.group))
.each(function(d) { d.text = this; })
.on("mouseover", overed)
.on("mouseout", outed)
.call(text => text.append("title").text(d => `${id(d)} ${d.outgoing.length} outgoing ${d.incoming.length} incoming`));
// add edges
const link = svg.append("g")
.attr("stroke", colornone)
.attr("fill", "none")
.selectAll("path")
.data(root.leaves().flatMap(leaf => leaf.outgoing))
.join("path")
//.style("mix-blend-mode", "multiply")
.attr("d", ([i, o]) => line(i.path(o)))
.each(function(d) { d.path = this; });
function overed(event, d) {
//link.style("mix-blend-mode", null);
d3.select(this)
.style("fill", colordark)
.attr("font-weight", "bold");
d3.selectAll(d.incoming.map(d => d.path))
.attr("stroke", d => colors(d[0].data.group))
.attr("stroke-width", 4)
.raise();
d3.selectAll(d.outgoing.map(d => d.path))
.attr("stroke", d => colors(d[1].data.group))
.attr("stroke-width", 4)
.raise()
d3.selectAll(d.incoming.map(([d]) => d.text))
.style("fill", colordark)
.attr("font-weight", "bold");
d3.selectAll(d.outgoing.map(([, d]) => d.text))
.style("fill", colordark)
.attr("font-weight", "bold");
}
function outed(event, d) {
//link.style("mix-blend-mode", "multiply");
d3.select(this)
.style("fill", d => colors(d.data.group))
.attr("font-weight", null);
d3.selectAll(d.incoming.map(d => d.path))
.attr("stroke", colornone)
.attr("stroke-width", 1);
d3.selectAll(d.outgoing.map(d => d.path))
.attr("stroke", colornone)
.attr("stroke-width", 1);
d3.selectAll(d.incoming.map(([d]) => d.text))
.style("fill", d => colors(d.data.group))
.attr("font-weight", null);
d3.selectAll(d.outgoing.map(([, d]) => d.text))
.style("fill", d => colors(d.data.group))
.attr("font-weight", null);
}
function id(node) {
return `${node.parent ? id(node.parent) + "." : ""}${node.data.name}`;
}
function bilink(root) {
const map = new Map(root.leaves().map(d => [id(d), d]));
for (const d of root.leaves()) d.incoming = [], d.outgoing = d.data.imports.map(i => [d, map.get(i)]);
for (const d of root.leaves()) for (const o of d.outgoing) o[1].incoming.push(o);
return root;
}
function hierarchy(data, delimiter = ".") {
let root;
const map = new Map;
data.forEach(function find(data) {
const {name} = data;
if (map.has(name)) return map.get(name);
const i = name.lastIndexOf(delimiter);
map.set(name, data);
if (i >= 0) {
find({name: name.substring(0, i), children: []}).children.push(data);
data.name = name.substring(i + 1);
} else {
root = data;
}
return data;
});
return root;
}
}
.node {
font: 300 11px "Helvetica Neue", Helvetica, Arial, sans-serif;
fill: #fff;
}
.arcLabel {
font: 300 14px "Helvetica Neue", Helvetica, Arial, sans-serif;
fill: #fff;
}
<script src="https://cdnjs.cloudflare.com/ajax/libs/d3/6.0.0/d3.min.js"></script>

Setting color of marker-end arrow in D3.js

The code below displays marker-ends on arrows/paths/lines as intended, but the color of the marker-end does not vary by line (i.e., it is always the same orange color, not the color of its respective line). I think the code is defaulting to the color assigned to the first field of my data(?). Any advice would be appreciated.
<script src="http://www.protobi.com/javascripts/d3.v3.min.js"></script>
<script src="http://labratrevenge.com/d3-tip/javascripts/d3.tip.v0.6.3.js"></script>
<script src="http://www.protobi.com/examples/pca/pca.js"></script>
<script type="text/javascript">
var margin = {top: 20, right: 20, bottom: 20, left: 20};
var width = 1500 - margin.left - margin.right;
var height = 1500 - margin.top - margin.bottom;
var angle = Math.PI * 0;
var color = d3.scale.category10();
var x = d3.scale.linear().range([width, 0]); // switch to match how R biplot shows it
var y = d3.scale.linear().range([height, 0]);
x.domain([-3.5,3.5]).nice()
y.domain([-3.5,3.5]).nice()
var xAxis = d3.svg.axis()
.scale(x)
.orient("bottom");
var yAxis = d3.svg.axis()
.scale(y)
.orient("left");
var svg = d3.select("svg")
.attr("width", width + margin.left + margin.right)
.attr("height", height + margin.top + margin.bottom)
.append("g")
.attr("transform", "translate(" + margin.left + "," + margin.top + ")");
d3.csv("/brand.csv", function(error, data) {
var matrix = data.map(function(d){
return d3.values(d).slice(1,d.length).map(parseFloat);
});
var pca = new PCA();
matrix = pca.scale(matrix,true,true);
pc = pca.pca(matrix,2)
var A = pc[0]; // this is the U matrix from SVD
var B = pc[1]; // this is the dV matrix from SVD
var brand_names = Object.keys(data[0]); // first row of data file ["ATTRIBUTE", "BRAND A", "BRAND B", "BRAND C", ...]
brand_names.shift(); // drop the first column label, e.g. "ATTRIBUTE"
data.map(function(d,i){
label: d.ATTRIBUTE,
d.pc1 = A[i][0];
d.pc2 = A[i][1];
});
var label_offset = {
"Early/First line": 20,
"Unfamiliar":10,
"Convenient": -5
}
var brands = brand_names
.map(function(key, i) {
return {
brand: key,
pc1: B[i][0]*4,
pc2: B[i][1]*4
}
});
function rotate(x,y, dtheta) {
var r = Math.sqrt(x*x + y*y);
var theta = Math.atan(y/x);
if (x<0) theta += Math.PI;
return {
x: r * Math.cos(theta + dtheta),
y: r * Math.sin(theta + dtheta)
}
}
data.map(function(d) {
var xy = rotate(d.pc1, d.pc2, angle);
d.pc1 = xy.x;
d.pc2 = xy.y;
});
brands.map(function(d) {
var xy = rotate(d.pc1, d.pc2, angle);
d.pc1 = xy.x;
d.pc2 = xy.y;
});
var showAxis = false; // normally we don't want to see the axis in PCA, it's meaningless
if (showAxis) {
svg.append("g")
.attr("class", "x axis")
.attr("transform", "translate(0," + height + ")")
.call(xAxis)
.append("text")
.attr("class", "label")
.attr("x", width)
.attr("y", -6)
.style("text-anchor", "end")
.text("PC1");
svg.append("g")
.attr("class", "y axis")
.call(yAxis)
.append("text")
.attr("class", "label")
.attr("transform", "rotate(-90)")
.attr("y", 6)
.attr("dy", ".71em")
.style("text-anchor", "end")
.text("PC2");
}
var legend = svg.selectAll(".legend")
.data(color.domain())
.enter().append("g")
.attr("class", "legend")
.attr("transform", function(d, i) { return "translate(0," + i * 20 + ")"; });
legend.append("rect")
.attr("x", width - 18)
.attr("width", 18)
.attr("height", 18)
.style("fill", color);
legend.append("text")
.attr("x", width - 24)
.attr("y", 9)
.attr("dy", ".35em")
.style("text-anchor", "end")
.text(function(d) { return d; });
svg.selectAll(".dot")
.data(data)
.enter().append("circle")
.attr("class", "dot")
.attr("r", 10.5)
.attr("cx", function(d) { return x(d.pc1); })
.attr("cy", function(d) { return y(d.pc2); })
.style("fill", function(d) { return color(d['species']); })
.on('mouseover', onMouseOverAttribute)
.on('mouseleave', onMouseLeave);
svg.selectAll("text.brand")
.data(brands)
.enter().append("text")
.attr("class", "label-brand")
.attr("x", function(d) { return x(d.pc1) + 10; })
.attr("y", function(d) { return y(d.pc2) + 0; })
.text(function(d) { return d['brand']})
svg.selectAll("marker.brand")
.data(brands)
.enter().append("svg:marker")
.attr('id', 'end-arrow')
.attr('viewBox', '0 -5 10 10')
.attr('refX', 6)
.attr('markerWidth', 10)
.attr('markerHeight', 10)
.attr('orient', 'auto')
.append('svg:path')
.attr('d', 'M0,-5L10,0L0,5')
.style("fill", function(d) { return color(d['brand']); });
svg.selectAll(".line")
.data(brands)
.enter().append("line")
.attr("class", "square")
.attr('x1', function(d) { return x(-d.pc1);})
.attr('y1', function(d) { return y(-d.pc2); })
.attr("x2", function(d) { return x(d.pc1); })
.attr("y2", function(d) { return y(d.pc2); })
.style("stroke", function(d) { return color(d['brand']); })
.style('marker-end', "url(#end-arrow)")
.on('mouseover', onMouseOverBrand)
.on('mouseleave', onMouseLeave);
svg.selectAll("text.attr")
.data(data)
.enter().append("text")
.attr("class", "label-attr")
.attr("x", function(d,i ) { return x(d.pc1)+4 ; })
.attr("y", function(d ,i) { return y(d.pc2) + (label_offset[d.ATTRIBUTE]||0); })
.text(function(d,i) { return d.ATTRIBUTE})
var pctFmt = d3.format('0%')
var tip = d3.tip()
.attr('class', 'd3-tip')
.offset([10, 20])
.direction('e')
.html(function(values,title) {
var str =''
str += '<h3>' + (title.length==1 ? 'Brand ' : '' )+ title + '</h3>'
str += "<table>";
for (var i=0; i<values.length; i++) {
if (values[i].key != 'ATTRIBUTE' && values[i].key != 'pc1' && values[i].key != 'pc2') {
str += "<tr>";
str += "<td>" + values[i].key + "</td>";
str += "<td class=pct>" + pctFmt(values[i].value) + "</td>";
str + "</tr>";
}
}
str += "</table>";
return str;
});
svg.call(tip);
function getSpPoint(A,B,C){
var x1=A.x, y1=A.y, x2=B.x, y2=B.y, x3=C.x, y3=C.y;
var px = x2-x1, py = y2-y1, dAB = px*px + py*py;
var u = ((x3 - x1) * px + (y3 - y1) * py) / dAB;
var x = x1 + u * px, y = y1 + u * py;
return {x:x, y:y}; //this is D
}
// draw line from the attribute a perpendicular to each brand b
function onMouseOverAttribute(a,j) {
brands.forEach(function(b, idx) {
var A = { x: 0, y:0 };
var B = { x: b.pc1, y: b.pc2 };
var C = { x: a.pc1, y: a.pc2 };
b.D = getSpPoint(A,B,C);
});
svg.selectAll('.tracer')
.data(brands)
.enter()
.append('line')
.attr('class', 'tracer')
.attr('x1', function(b,i) { return x(a.pc1); return x1; })
.attr('y1', function(b,i) { return y(a.pc2); return y1; })
.attr('x2', function(b,i) { return x(b.D.x); return x2; })
.attr('y2', function(b,i) { return y(b.D.y); return y2; })
.style("stroke", function(d) { return "#aaa"});
delete a.D;
var tipText = d3.entries(a);
tip.show(tipText, a.ATTRIBUTE);
};
// draw line from the brand axis a perpendicular to each attribute b
function onMouseOverBrand(b,j) {
data.forEach(function(a, idx) {
var A = { x: 0, y:0 };
var B = { x: b.pc1, y: b.pc2 };
var C = { x: a.pc1, y: a.pc2 };
a.D = getSpPoint(A,B,C);
});
svg.selectAll('.tracer')
.data(data)
.enter()
.append('line')
.attr('class', 'tracer')
.attr('x1', function(a,i) { return x(a.D.x); })
.attr('y1', function(a,i) { return y(a.D.y); })
.attr('x2', function(a,i) { return x(a.pc1); })
.attr('y2', function(a,i) { return y(a.pc2); })
.style("stroke", function(d) { return "#aaa"});
var tipText = data.map(function(d) {
return {key: d.ATTRIBUTE, value: d[b['brand']] }
})
tip.show(tipText, b.brand);
};
function onMouseLeave(b,j) {
svg.selectAll('.tracer').remove()
tip.hide();
}
});

While you are creating an svg:marker for each line, you give them all the same id. When they are then used on your line elements, since they all have the same id you are only using one of them.
Simple fix, give them unique ids:
svg.selectAll("marker.brand")
.data(brands)
.enter().append("svg:marker")
.attr('id', function(d,i){
return 'end-arrow' + i; //<-- append index postion
})
...
svg.selectAll(".line")
.data(brands)
.enter().append("line")
.attr("class", "square")
.attr('x1', function(d) {
return x(-d.pc1);
})
.attr('y1', function(d) {
return y(-d.pc2);
})
.attr("x2", function(d) {
return x(d.pc1);
})
.attr("y2", function(d) {
return y(d.pc2);
})
.style("stroke", function(d) {
return color(d['brand']);
})
.style('marker-end', function(d,i){
return "url(#end-arrow"+i+")"; //<--use the one with the right id
})
....
Example here.

D3js Force Layout, dynamic links

thanks for reading -- I am designing an interactive foreign language teaching tool using the D3js force bubble layout. In essence, users can select a language textbook chapter, part of speech, or specific word and the interface will display the word(s) in a series of bubbles each clustered together by their part of speech (adjective, noun, verb, etc.). These bubbles are free floating, no links between them.
When you click a word I have it open up more bubbles with information about that specific word (lexeme, meaning in english, frequency, etc.), but I want those bubbles to be attached to the original bubble with links. I'm having a lot of trouble conceptualizing how to do this dynamically (source -> target), even though it should be pretty straightforward.
First I draw the bubbles based on user input, some of which I've left out so the code doesn't get too long:
var nodes = d3.range(n).map(function(j) { return createNode(colorList, j); });
function createNode(info, j){
var keys = objectKeys;
var cluster, r;
if (info[j].Lexeme.length < 3) {
var radius = info[j].Lexeme.length * 15;
}
else {
var radius = info[j].Lexeme.length * 5;
}
$.each(keys, function(x, y){
if (info[j].POS == x){
cluster = y;
}
});
d = {cluster: cluster, radius: radius, info: info[j]};
if (!clusters[cluster] || (r > clusters[cluster].radius)) clusters[cluster] = d;
return d;
}
d3.layout.pack()
.sort(null)
.size([width, height])
.children(function(d) { return d.values;})
.value(function(d) { return d.radius * d.radius; })
.nodes({values: d3.nest()
.key(function(d) { return d.cluster; })
.entries(nodes)});
var force = d3.layout.force()
.nodes(nodes)
.size([width, height])
.gravity(.00001)
.charge(0)
.on("tick", tick)
.start();
var svg = d3.select("#canvas").append("svg")
.attr("width", width)
.attr("height", height);
var node = svg.selectAll("circle")
.data(nodes)
.enter().append("circle")
.attr("class", function (d, i) { return "node_n" + i; })
.style("fill", function(d) {return d.info.fillColor;})
.on("click", nodeSelect)
.on("dblclick", infoNode)
.call(force.drag);
//Add the SVG Text Element to the svgContainer
var text = svg.selectAll("text")
.data(nodes)
.enter()
.append("text");
//Add SVG Text Element Attributes
text
.attr("cx", function(d) { return d.x; })
.attr("cy", function(d) { return d.y; })
.text( function (d) { return d.info.Lexeme; })
.attr("font-family", "sans-serif")
.attr("text-anchor", "middle")
.attr("font-size", "13px")
.attr("fill", "#000000");
node.transition()
.duration(750)
.delay(function(d, i) { return i * 5; })
.attrTween("r", function(d) {
var i = d3.interpolate(0, d.radius);
return function(t) { return d.radius = i(t); };
});
function tick(e) {
node
.each(cluster(5 * e.alpha * e.alpha))
.each(collide(.3))
.attr("cx", function(d) { return d.x; })
.attr("cy", function(d) { return d.y; });
text
.attr("transform", transform);
}
function transform(d) {
return "translate(" + d.x + "," + d.y + ")";
}
function nodeSelect(d) {
if (d3.select(this).style("opacity") == 1 && nodeSelected == 0) {
nodeSelected = 1;
d3.select(this).style("opacity", ".3");
}
else if (d3.select(this).style("opacity") == .3 && nodeSelected == 1){
nodeSelected = 0;
d3.select(this).style("opacity", "1");
}
}
// Move d to be adjacent to the cluster node.
function cluster(alpha) {
return function(d) {
var cluster = clusters[d.cluster];
if (cluster === d) return;
var x = d.x - cluster.x,
y = d.y - cluster.y,
l = Math.sqrt(x * x + y * y),
r = d.radius + cluster.radius;
if (l != r) {
l = (l - r) / l * alpha;
d.x -= x *= l;
d.y -= y *= l;
cluster.x += x;
cluster.y += y;
}
};
}
// Resolves collisions between d and all other circles.
function collide(alpha) {
var quadtree = d3.geom.quadtree(nodes);
return function(d) {
var r = d.radius + maxRadius + Math.max(padding, clusterPadding),
nx1 = d.x - r,
nx2 = d.x + r,
ny1 = d.y - r,
ny2 = d.y + r;
quadtree.visit(function(quad, x1, y1, x2, y2) {
if (quad.point && (quad.point !== d)) {
var x = d.x - quad.point.x,
y = d.y - quad.point.y,
l = Math.sqrt(x * x + y * y),
r = d.radius + quad.point.radius + (d.cluster === quad.point.cluster ? padding : clusterPadding);
if (l < r) {
l = (l - r) / l * alpha;
d.x -= x *= l;
d.y -= y *= l;
quad.point.x += x;
quad.point.y += y;
}
}
return x1 > nx2 || x2 < nx1 || y1 > ny2 || y2 < ny1;
});
};
}
function infoNodes(d){
$.each(d.info, function(i, val){
if (val != "" && val !="NA" && i != "fillColor"){
var b = d.cluster;
var r = 50;
var q = {cluster: b, radius: r, info: val, fillColor: d.info.fillColor};
if (!clusters[cluster] || (r > clusters[cluster].radius)) clusters[cluster] = q;
nodes.push(q);
}
});
update(d);
}
function update(j) {
node = svg.selectAll("circle")
.data(nodes)
.call(force.drag);
node.enter().append("circle")
.attr("class", function (d, i) { return "info_" + d;})
.attr("cx", function (d) { return d.x; })
.attr("cy", function (d) { return d.y; })
.attr("r", function (d) { if (d.info.length < 5 || d.info.length == null) { return 30; } else { return d.info.length * 3.3; } })
.style("fill", function(d) {return d.fillColor;})
.call(force.drag);
text = svg.selectAll("text")
.data(nodes)
.call(force.drag);
text.enter().append("text")
.attr("cx", function(d) { return d.x; })
.attr("cy", function(d) { return d.y; })
.text( function (d) { return d.info; })
.attr("font-family", "sans-serif")
.attr("text-anchor", "middle")
.attr("font-size", "13px")
.attr("fill", "#000000")
.call(force.drag);
force.start();
}
The function can draw info nodes and update, but I can't figure out how to draw info nodes attached to the node you click with lines that connect them.
Let me know if more explanation is needed.

Draw a D3 circle with gradient colours

How to draw a circle with gradient color? Say, a gradient from yellow to blue.
Normally, to create a circle in yellow we can use the following code:
var cdata=[50,40];
var xscale=40;
var xspace =50;
var yscale=70;
var svg = d3.select("body")
.append("svg")
.attr("width", 1600)
.attr("height", 1600);
var circle = svg.selectAll("circle")
.data(cdata)
.enter()
.append("circle");
var circleattr = circle
.attr("cx", function(d) {
xscale = xscale+xspace;
return xscale;
})
.attr("cy", function(d) {
yscale=yscale+xspace+10;
return yscale;
})
.attr("r", function(d) {
return d;
})
.style("fill","yellow");

You have to define the gradient in the SVG first, and then fill the circle with an SVG link to the gradient element.
// Define the gradient
var gradient = svg.append("svg:defs")
.append("svg:linearGradient")
.attr("id", "gradient")
.attr("x1", "0%")
.attr("y1", "0%")
.attr("x2", "100%")
.attr("y2", "100%")
.attr("spreadMethod", "pad");
// Define the gradient colors
gradient.append("svg:stop")
.attr("offset", "0%")
.attr("stop-color", "#a00000")
.attr("stop-opacity", 1);
gradient.append("svg:stop")
.attr("offset", "100%")
.attr("stop-color", "#aaaa00")
.attr("stop-opacity", 1);
// Fill the circle with the gradient
var circle = svg.append('circle')
.attr('cx', width / 2)
.attr('cy', height / 2)
.attr('r', height / 3)
.attr('fill', 'url(#gradient)');
A jsFiddle with the complete example. More details on how to define SVG gradients in the MDN Tutorial. The resulting image:

Take a look at this code snippet:
var width = 500,
height = 500,
padding = 1.5, // separation between same-color nodes
clusterPadding = 6, // separation between different-color nodes
maxRadius = 12;
var n = 200, // total number of nodes
m = 10; // number of distinct clusters
var color = d3.scale.category10()
.domain(d3.range(m));
// The largest node for each cluster.
var clusters = new Array(m);
var nodes = d3.range(n).map(function() {
var i = Math.floor(Math.random() * m),
r = Math.sqrt((i + 1) / m * -Math.log(Math.random())) * maxRadius,
d = {cluster: i, radius: r};
if (!clusters[i] || (r > clusters[i].radius)) clusters[i] = d;
return d;
});
// Use the pack layout to initialize node positions.
d3.layout.pack()
.sort(null)
.size([width, height])
.children(function(d) { return d.values; })
.value(function(d) { return d.radius * d.radius; })
.nodes({values: d3.nest()
.key(function(d) { return d.cluster; })
.entries(nodes)
});
var force = d3.layout.force()
.nodes(nodes)
.size([width, height])
.gravity(.02)
.charge(0)
.on("tick", tick)
.start();
var svg = d3.select("body").append("svg")
.attr("width", width)
.attr("height", height);
var grads = svg.append("defs").selectAll("radialGradient")
.data(nodes)
.enter()
.append("radialGradient")
.attr("gradientUnits", "objectBoundingBox")
.attr("cx", 0)
.attr("cy", 0)
.attr("r", "100%")
.attr("id", function(d, i) { return "grad" + i; });
grads.append("stop")
.attr("offset", "0%")
.style("stop-color", "white");
grads.append("stop")
.attr("offset", "100%")
.style("stop-color", function(d) { return color(d.cluster); });
var node = svg.selectAll("circle")
.data(nodes)
.enter()
.append("circle")
.style("fill", function(d, i) {
return "url(#grad" + i + ")";
})
// .style("fill", function(d) { return color(d.cluster); })
.call(force.drag);
node.transition()
.duration(750)
.delay(function(d, i) { return i * 5; })
.attrTween("r", function(d) {
var i = d3.interpolate(0, d.radius);
return function(t) { return d.radius = i(t); };
});
function tick(e) {
node
.each(cluster(10 * e.alpha * e.alpha))
.each(collide(.5))
.attr("cx", function(d) { return d.x; })
.attr("cy", function(d) { return d.y; });
}
// Move d to be adjacent to the cluster node.
function cluster(alpha) {
return function(d) {
var cluster = clusters[d.cluster];
if (cluster === d) return;
var x = d.x - cluster.x,
y = d.y - cluster.y,
l = Math.sqrt(x * x + y * y),
r = d.radius + cluster.radius;
if (l != r) {
l = (l - r) / l * alpha;
d.x -= x *= l;
d.y -= y *= l;
cluster.x += x;
cluster.y += y;
}
};
}
// Resolves collisions between d and all other circles.
function collide(alpha) {
var quadtree = d3.geom.quadtree(nodes);
return function(d) {
var r = d.radius + maxRadius + Math.max(padding, clusterPadding),
nx1 = d.x - r,
nx2 = d.x + r,
ny1 = d.y - r,
ny2 = d.y + r;
quadtree.visit(function(quad, x1, y1, x2, y2) {
if (quad.point && (quad.point !== d)) {
var x = d.x - quad.point.x,
y = d.y - quad.point.y,
l = Math.sqrt(x * x + y * y),
r = d.radius + quad.point.radius +
(d.cluster === quad.point.cluster ? padding : clusterPadding);
if (l < r) {
l = (l - r) / l * alpha;
d.x -= x *= l;
d.y -= y *= l;
quad.point.x += x;
quad.point.y += y;
}
}
return x1 > nx2 || x2 < nx1 || y1 > ny2 || y2 < ny1;
});
};
}
<script src="https://cdnjs.cloudflare.com/ajax/libs/d3/3.4.11/d3.min.js"></script>
It contains support for drawing SVG circles with gradient (and achieving a 3D look-and-feel effect by doing this) and is based on SVG radial gradients.
For each node, a gradient is defined:
var grads = svg.append("defs").selectAll("radialGradient")
.data(nodes)
.enter()
.append("radialGradient")
.attr("gradientUnits", "objectBoundingBox")
.attr("cx", 0)
.attr("cy", 0)
.attr("r", "100%")
.attr("id", function(d, i) { return "grad" + i; });
grads.append("stop")
.attr("offset", "0%")
.style("stop-color", "white");
grads.append("stop")
.attr("offset", "100%")
.style("stop-color", function(d) { return color(d.cluster); });
Then, instead of line:
.style("fill", function(d) { return color(d.cluster); })
this line is added in the code that creates circles:
.attr("fill", function(d, i) {
return "url(#grad" + i + ")";
})
This produces this effect:(animated gif that I used has some limitations for number of colors, so gradients are not smooth as in real example)